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Bourland, W., Pomahač, O., Méndez-Sánchez, D., Beinart, R.A., Bernhard, J.M., Čepička, I. & Rotterová, J. (2025) The end of a winding path: The anaerobic ciliate Spirorhynchus is a member of the class Muranotrichea. Protist, 179: 126129.

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Fialová, M.K., Kapustová, A., Čepička, I. & Svobodová, M. (2025) Trypanosoma tertium n. sp.: prevalences in natural hosts and development in the mosquito vector. Parasitology, 152, 487-496.

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Kotyk, M., Kotyková Varadínová, Z., Hrubá, P. & Čepička, I. (2025) Unveiling the remarkable diversity of the genus Hypotrichomonas (Parabasalia: Hypotrichomonadidae) in cockroaches (Blattodea, excluding Isoptera). Protist, 177, 12600.

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Bourland, W. & Čepička, I. (2025) The enigmatic genus Malacophrys Kahl, 1926 (Ciliophora: Intramacronucleata) belongs to the class Oligohymenophorea. Protist, 176, 126089.

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Pánek, T., Tice, A.K., Corre, P., Hrubá, P., Žihala, D., Kamikawa, R., Yazaki, E., Shiratori, T., Kume, K., Hashimoto, T., Ishida, K., Hradilová, M., Silberman, J.D., Roger, A.J., Inagaki, Y., Eliáš, M., Brown, M.W. & Čepička, I. (2025). An expanded phylogenomic analysis of Heterolobosea reveals the deep relationships, non-canonical genetic codes, and cryptic flagellate stages in the group. Molecular Phylogenetics and Evolution, 204, 108289.

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